UK Public Sector Code by Organisation

An R package to standardise methods used in Public Health Scotland

Standard R templates and project structure for Public Health Scotland (https://code.publichealthscotland.scot/phstemplates/)

Code to create Public Health Scotland's Hospital Acute Care Activity publication

Standard graphic styles for use in Public Health Scotland

Functions to extract and interact with data from the Scottish Health and Social Care Open Data platform.

A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland

Code behind re-development of online ScotPHO profiles shiny app

Reproducible Analytical Pipeline of the Hospital Standardised Mortality Ratio (HSMR) quarterly publication

Code used to prepare data for indicators in ScotPHO's profiles

Technical documentation, including guidance and best practice for Public Health Scotland (PHS)

An R package for working with the SLFs

This repo is for the syntax used for the PHS Source Linkage File project

Web app for PHS staff to access training and guidance resources and social content related to Data Science.

MHIA Data Explorer App

The Mental Health Team's repo for the Mental Health Quality Indicators Dashboard

Reproducible Analytical Pipeline (RAP) for Dementia Post-Diagnostic Support (PDS) management reports and publication.

Parsing prescription dose instructions using Named Entity Recognition and rules

Processing of Quality Performance Indicators data, as part of the National Cancer Quality Programme (Scotland).

Code to produce the Scottish Pregnancy, Births and Neonatal Data dashboard (SPBAND)

A patient-level dataset for outpatient mental health in Scotland.

What the Package Does (One Line, Title Case)

PHS Lookups

Preparing geography and population lookups used to produce indicator data

A collection of best practice examples for use by LIST team members.

This repository contains the code for analysing the 2025 health and care experience survey

This repo helps to prepare your vscode in the new Posit

Emergency and Non-Emergency Routes to Cancer Diagnosis

Easily install and load packages developed in PHS

This repo contains the code for the FLAG (Farrington localised aberration guide) surveillance system and is managed by members of the Routine Surveillance and Health Protection (RSHP) team at PHS.

Reproducible Analytical Pipeline (RAP) for Percentage of End of Life Spent at Home or in a Community Setting Publication

Code used to prepare data for ScotPHO's website

Code for production of the National Indicators

This Python Shiny app template includes customizable styles that help you brand your app

Repository for data quality reporting by the PHS Data Management Vaccines team.

Automated report to examine the impact of using 2022 datazones to define HSCP localities

Expanded Routes to Cancer Diagnosis

Code for extracting survey data from UK Data Service/Archive microdata files and processing for the ScotPHO online profiles app.

Experimental dashboard for the National Resource Allocation publication.

Content used by Public Health Scotland such as logos and branding files that can be linked to in code.

Analysis of NL & SL HL1 applicants using the Source Linkage Files

An interactive, online introduction to python training for employees in Public Health Scotland.

Repository to hold all code relating to honours project looking at prescribing forecasting

SNAP - Scottish Robotic Assisted Surgery Audit

Scripts for GPD team business as usual work such as creating GPD files

Code for construction of the dementia index

Public repository for hdFA safety study code

Functions and templates for the Scottish National Audit Programme

Genomics base repository template

Public Health Scotland's SARS-CoV-2 assembly pipeline.

R scripts to run the PHS heat-impacts DLNM

Details of a Scotland-wide cohort study to assess RSVpreF vaccine safety in pregnancy

A nextflow-based workflow for running ncov-tools

Suppression of Sensitive Numbers for Public Facing Reports

Output repo for the General Practice List Size and Demographics Shiny app.

A general file structure for a new R package

A bespoke request from Scottish Gov asking for a cost per head figure for staff costs using NRAC methodology.

R Shiny dashboard to display the metadata for the health & wellbeing catalogue.

This code produces the shiny app chart in the Deaths and life expectancy > Data > Scotland section of the ScotPHO website.